| Batch requestChromosomal location |
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Define chromosomal location manually or using SNP or STS id
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Start location of the chromosomal region (in bases) |
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End location of the chromosomal region (in bases) |
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For batch requests, each line represents a chromosomal location with the following syntax: "chromosome:start-end".
Example: 5:55000000-60000000 = Chromosome 5, between positions 55000000 and 60000000
Note: No verification of locations is done before processing. It is your responsability to enter valid chromosomes and positions.
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| SNP dataset to include in display (optional) |
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SNP datafile must be in a tab-delimited format with the following columns: SNP name, Chromosome, Genomic location (in bases).
Note: Users can add a header in their file (this header line must begin with "#". Please also note that a fourth column can be used to display your user-defined data.
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Note: Due to slight differences in the SNP locations between databases, the re-map option will take the NCBI location as reference if the SNP marker is found in the database. This option will only be functional when using conventional SNP name ID (see Biomart or NCBI for a complete description). Else, the user-provided location will be used to insert SNPs (must be in bases) in the selected genomic region.
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| Highlight genes with specific GO terms annotations (optional) |
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See geneontology.org for GO terms ID or terms
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optional, one per line e.g. GO:0008150 or lipid |
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if "Add GOA from others species" is checked |
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Note: Despite of the fact it can be irrelevant, be aware that searching for GO relationship of 'near-root' GOID can be CPU-consumming (i.e. it will take some times...)
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| Highlight genes that match with Mammalian Phenotype Database (optional) |
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See Mammalian Phenotype browser for more details
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optional, one per line, no space between keywords, e.g. reproductive |
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| Highlight genes that match with OMIM disorders (optional) |
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See OMIM browser for more details
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optional, one per line, no space between keywords |
| Synteny conservation options |
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Note: Please note that synteny order < 2 can give no results (as synteny segments are too small to match your chromosomal region
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